PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim07g045000.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 177aa    MW: 19954.8 Da    PI: 5.5191
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim07g045000.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like26.61.4e-081193654
             G2-like 36 mkvkgLtlehvkSHLQkYR 54
                        m vkgL ++hvkSHLQ+YR
  Sopim07g045000.0.1  1 MAVKGLKISHVKSHLQMYR 19
                        89***************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-7121IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MAVKGLKISH VKSHLQMYRN LKERGNLNMV RSVNNFHEET PQFSWSSPQH VCEALLEHGP  60
SKSSKQIDPG SDKLPNYKAI INAYIAENNI YCYDYQEAQG SLSSGMTKEE EDDDGGGGGG  120
PSSEIYEFSH EREINFWPLN DYNHQNSQYD SSKKQVLNST KDNSHINLDL SISSYF*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755191e-134HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010323925.11e-129PREDICTED: uncharacterized protein LOC101246548 isoform X2
TrEMBLK4CEQ81e-130K4CEQ8_SOLLC; Uncharacterized protein
STRINGSolyc07g045000.2.11e-129(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94591325